MICAS: Microsatellite Analysis Server 3.0

All Non-Coding Repeats of Yersinia pestis CO92 plasmid pPCP1

Total Repeats: 89

S.No.	Genome ID	Motif	Iterations	Length	Start	End	A%	T%	G%	C%	Protein ID
1	NC_003132	AACG	2	8	4	11	50 %	0 %	25 %	25 %	Non-Coding
2	NC_003132	TGG	2	6	1913	1918	0 %	33.33 %	66.67 %	0 %	Non-Coding
3	NC_003132	CGT	2	6	1944	1949	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
4	NC_003132	TGA	2	6	1958	1963	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
5	NC_003132	T	6	6	2015	2020	0 %	100 %	0 %	0 %	Non-Coding
6	NC_003132	CAG	2	6	2096	2101	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
7	NC_003132	ACA	2	6	2116	2121	66.67 %	0 %	0 %	33.33 %	Non-Coding
8	NC_003132	A	6	6	2132	2137	100 %	0 %	0 %	0 %	Non-Coding
9	NC_003132	AC	3	6	2211	2216	50 %	0 %	0 %	50 %	Non-Coding
10	NC_003132	GAT	2	6	2241	2246	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
11	NC_003132	T	6	6	2373	2378	0 %	100 %	0 %	0 %	Non-Coding
12	NC_003132	GTT	2	6	2381	2386	0 %	66.67 %	33.33 %	0 %	Non-Coding
13	NC_003132	T	6	6	2385	2390	0 %	100 %	0 %	0 %	Non-Coding
14	NC_003132	GTC	2	6	2399	2404	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
15	NC_003132	GACGG	2	10	2503	2512	20 %	0 %	60 %	20 %	Non-Coding
16	NC_003132	A	6	6	2526	2531	100 %	0 %	0 %	0 %	Non-Coding
17	NC_003132	TGT	2	6	2536	2541	0 %	66.67 %	33.33 %	0 %	Non-Coding
18	NC_003132	TCAG	2	8	2544	2551	25 %	25 %	25 %	25 %	Non-Coding
19	NC_003132	ACAG	2	8	2559	2566	50 %	0 %	25 %	25 %	Non-Coding
20	NC_003132	T	7	7	2652	2658	0 %	100 %	0 %	0 %	Non-Coding
21	NC_003132	T	6	6	2705	2710	0 %	100 %	0 %	0 %	Non-Coding
22	NC_003132	TAC	2	6	2721	2726	33.33 %	33.33 %	0 %	33.33 %	Non-Coding
23	NC_003132	A	7	7	2746	2752	100 %	0 %	0 %	0 %	Non-Coding
24	NC_003132	AAT	2	6	2799	2804	66.67 %	33.33 %	0 %	0 %	Non-Coding
25	NC_003132	GCG	2	6	3408	3413	0 %	0 %	66.67 %	33.33 %	Non-Coding
26	NC_003132	CTCA	2	8	3425	3432	25 %	25 %	0 %	50 %	Non-Coding
27	NC_003132	CA	3	6	3453	3458	50 %	0 %	0 %	50 %	Non-Coding
28	NC_003132	A	6	6	3492	3497	100 %	0 %	0 %	0 %	Non-Coding
29	NC_003132	C	6	6	3548	3553	0 %	0 %	0 %	100 %	Non-Coding
30	NC_003132	C	6	6	3629	3634	0 %	0 %	0 %	100 %	Non-Coding
31	NC_003132	TG	3	6	3782	3787	0 %	50 %	50 %	0 %	Non-Coding
32	NC_003132	C	6	6	3794	3799	0 %	0 %	0 %	100 %	Non-Coding
33	NC_003132	GCA	2	6	3878	3883	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
34	NC_003132	TTGAAG	2	12	3925	3936	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
35	NC_003132	T	6	6	4061	4066	0 %	100 %	0 %	0 %	Non-Coding
36	NC_003132	GCA	2	6	4076	4081	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
37	NC_003132	A	7	7	4094	4100	100 %	0 %	0 %	0 %	Non-Coding
38	NC_003132	AAG	2	6	4108	4113	66.67 %	0 %	33.33 %	0 %	Non-Coding
39	NC_003132	CAG	2	6	4155	4160	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
40	NC_003132	ATG	2	6	4167	4172	33.33 %	33.33 %	33.33 %	0 %	Non-Coding
41	NC_003132	TGC	2	6	4188	4193	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
42	NC_003132	TGTA	2	8	4218	4225	25 %	50 %	25 %	0 %	Non-Coding
43	NC_003132	T	8	8	4264	4271	0 %	100 %	0 %	0 %	Non-Coding
44	NC_003132	ATT	2	6	4309	4314	33.33 %	66.67 %	0 %	0 %	Non-Coding
45	NC_003132	ATTT	2	8	4322	4329	25 %	75 %	0 %	0 %	Non-Coding
46	NC_003132	ATT	2	6	4794	4799	33.33 %	66.67 %	0 %	0 %	Non-Coding
47	NC_003132	A	8	8	5910	5917	100 %	0 %	0 %	0 %	Non-Coding
48	NC_003132	A	8	8	5927	5934	100 %	0 %	0 %	0 %	Non-Coding
49	NC_003132	TAA	2	6	5968	5973	66.67 %	33.33 %	0 %	0 %	Non-Coding
50	NC_003132	CGC	2	6	5979	5984	0 %	0 %	33.33 %	66.67 %	Non-Coding
51	NC_003132	AAT	2	6	6000	6005	66.67 %	33.33 %	0 %	0 %	Non-Coding
52	NC_003132	GAC	2	6	6547	6552	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
53	NC_003132	ATT	2	6	6569	6574	33.33 %	66.67 %	0 %	0 %	Non-Coding
54	NC_003132	ATT	2	6	6590	6595	33.33 %	66.67 %	0 %	0 %	Non-Coding
55	NC_003132	ATA	2	6	6624	6629	66.67 %	33.33 %	0 %	0 %	Non-Coding
56	NC_003132	AG	3	6	6645	6650	50 %	0 %	50 %	0 %	Non-Coding
57	NC_003132	TC	3	6	7619	7624	0 %	50 %	0 %	50 %	Non-Coding
58	NC_003132	TCC	2	6	7631	7636	0 %	33.33 %	0 %	66.67 %	Non-Coding
59	NC_003132	GGA	2	6	7645	7650	33.33 %	0 %	66.67 %	0 %	Non-Coding
60	NC_003132	AGG	2	6	7662	7667	33.33 %	0 %	66.67 %	0 %	Non-Coding
61	NC_003132	TG	3	6	7691	7696	0 %	50 %	50 %	0 %	Non-Coding
62	NC_003132	TGT	2	6	7737	7742	0 %	66.67 %	33.33 %	0 %	Non-Coding
63	NC_003132	CAC	2	6	8538	8543	33.33 %	0 %	0 %	66.67 %	Non-Coding
64	NC_003132	ACAG	2	8	8571	8578	50 %	0 %	25 %	25 %	Non-Coding
65	NC_003132	CAA	2	6	8589	8594	66.67 %	0 %	0 %	33.33 %	Non-Coding
66	NC_003132	CCG	2	6	8608	8613	0 %	0 %	33.33 %	66.67 %	Non-Coding
67	NC_003132	ACGA	2	8	8668	8675	50 %	0 %	25 %	25 %	Non-Coding
68	NC_003132	TGCC	2	8	8678	8685	0 %	25 %	25 %	50 %	Non-Coding
69	NC_003132	T	6	6	8706	8711	0 %	100 %	0 %	0 %	Non-Coding
70	NC_003132	TGG	2	6	8719	8724	0 %	33.33 %	66.67 %	0 %	Non-Coding
71	NC_003132	CAA	2	6	8803	8808	66.67 %	0 %	0 %	33.33 %	Non-Coding
72	NC_003132	TCAGAC	2	12	8851	8862	33.33 %	16.67 %	16.67 %	33.33 %	Non-Coding
73	NC_003132	CAG	2	6	8868	8873	33.33 %	0 %	33.33 %	33.33 %	Non-Coding
74	NC_003132	CTGT	2	8	8951	8958	0 %	50 %	25 %	25 %	Non-Coding
75	NC_003132	CAA	2	6	9023	9028	66.67 %	0 %	0 %	33.33 %	Non-Coding
76	NC_003132	TGC	2	6	9074	9079	0 %	33.33 %	33.33 %	33.33 %	Non-Coding
77	NC_003132	A	8	8	9080	9087	100 %	0 %	0 %	0 %	Non-Coding
78	NC_003132	AAT	2	6	9191	9196	66.67 %	33.33 %	0 %	0 %	Non-Coding
79	NC_003132	ACAA	2	8	9208	9215	75 %	0 %	0 %	25 %	Non-Coding
80	NC_003132	T	6	6	9222	9227	0 %	100 %	0 %	0 %	Non-Coding
81	NC_003132	T	7	7	9235	9241	0 %	100 %	0 %	0 %	Non-Coding
82	NC_003132	TAAT	2	8	9265	9272	50 %	50 %	0 %	0 %	Non-Coding
83	NC_003132	T	7	7	9357	9363	0 %	100 %	0 %	0 %	Non-Coding
84	NC_003132	CCT	2	6	9378	9383	0 %	33.33 %	0 %	66.67 %	Non-Coding
85	NC_003132	CCA	2	6	9408	9413	33.33 %	0 %	0 %	66.67 %	Non-Coding
86	NC_003132	A	6	6	9417	9422	100 %	0 %	0 %	0 %	Non-Coding
87	NC_003132	AGG	2	6	9432	9437	33.33 %	0 %	66.67 %	0 %	Non-Coding
88	NC_003132	A	6	6	9542	9547	100 %	0 %	0 %	0 %	Non-Coding
89	NC_003132	ATA	2	6	9573	9578	66.67 %	33.33 %	0 %	0 %	Non-Coding

©2012. Centre for DNA Fingerprinting & Diagnostics (CDFD), Hyderabad.